**The order in which this is presented right now makes no sense.**

If I have a system whose future evolution is important to predict, why not try to infer a plausible model instead of a convenient linear one?

To reconstruct the unobserved state, as opposed to the parameters of the process acting upon the state, we do state filtering. There can be interplay between these steps, if we are doing simulation-based online parameter inference, as in recursive estimation (what is the division between this and that?) Or: we might decide the state is unimportant and attempt to estimate the evolution only of the observations. That is the Koopman operator trick.

A compact overview is inserted incidentally in Cosmaβs review of Fan and Yao (2003) wherein he also recommends (Bosq and Blanke 2007; Bosq 1998; Taniguchi and Kakizawa 2000).

There are many methods. From an engineering/control perspective, we have (Brunton, Proctor, and Kutz 2016), generalises the process for linear time series. to a sparse regression version via Indirect inference, or recursive hierarchical generalised linear models, which is an obvious way to generalise linear systems in the same way GLM generalizes linear models. Kitagawa and Gersch (1996) is popular in a Bayes context.

Hefny, Downey, and Gordon (2015):

We address [β¦] these problems with a new view of predictive state methods for dynamical system learning. In this view, a dynamical system learning problem is reduced to a sequence of supervised learning problems. So, we can directly apply the rich literature on supervised learning methods to incorporate many types of prior knowledge about problem structure. We give a general convergence rate analysis that allows a high degree of flexibility in designing estimators. And finally, implementing a new estimator becomes as simple as rearranging our data and calling the appropriate supervised learning subroutines.

[β¦] More specifically, our contribution is to show that we can use much-more- general supervised learning algorithms in place of linear regression, and still get a meaningful theoretical analysis. In more detail:

we point out that we can equally well use any well-behaved supervised learning algorithm in place of linear regression in the first stage of instrumental-variable regression;

for the second stage of instrumental-variable regression, we generalize ordinary linear regression to its RKHS counterpart;

we analyze the resulting combination, and show that we get convergence to the correct answer, with a rate that depends on how quickly the individual supervised learners converge

## Method of adjoints

A trick in differentiation which happens to be useful in differentiating likelihood (or other functions) of time evolving systems using automatic differentiation. e.g. Errico (1997).

## In particle filters

## Incoming

## learning SDEs

- Diffrax
- [1912.05509] The Wasserstein-Fourier Distance for Stationary Time Series
- [2001.04385] Universal Differential Equations for Scientific Machine Learning
- 18.337J/6.338J: Parallel Computing and Scientific Machine Learning
- 2007.09660.pdf
- 2010.00746.pdf
- 978-0-387-21540-2_8.pdf
- AaltoML/SDE: Example codes for the book Applied Stochastic Differential Equations
- An Implicit/Explicit CUDA-Accelerated Solver for the 2D Beeler-Reuter Model
- DiffEqFlux.jl β A Julia Library for Neural Differential Equations
- DiffEqFlux.jl: Generalized Physics-Informed and Scientific Machine Learning (SciML) Β· DiffEqFlux.jl
- DifferentialEquations.jl: Scientific Machine Learning (SciML) Enabled Simulation and Estimation Β· DifferentialEquations.jl
- dnncode/Spatio-Temporal-Model-for-SPDE: Statistical Modeling for Spatio-Temporal Data from Physical Convection-Diffusion Processes
- Empirical Arithmetic Averaging Over the Compact Stiefel Manifold - IEEE Journals & Magazine
- Generalizing Automatic Differentiation to Automatic Sparsity, Uncertainty, Stability, and Parallelism
- mitmath/18303 at spring19
- Global Sensitivity Analysis Β· DifferentialEquations.jl
- Hilbert space methods for reduced-rank Gaussian process regression
- How can the general Greenβs function of a linear homogeneous differential equation be derived? - Mathematics Stack Exchange
- ICERM SciML conf
- Introduction to Scientific Machine Learning 2: Physics-Informed Neural Networks
- Introduction to Scientific Machine Learning through Physics-Informed Neural Networks
- JB_grothendieck_proof.pdf
- JuliaSim - Julia Computing
- kar12Supple.pdf
- Kolmogorov Backward Equations
- mitmath/18303: 18.303 - Linear PDEs course
- ModelingToolkit, Modelica, and Modia: The Composable Modeling Future in Julia
- Neural SDEs: Deep Generative Models in the Diffusion Limit - Maxim Raginsky
- NeuralNetDiffEq.jl: A Neural Network solver for ODEs
- Noise Processes Β· DifferentialEquations.jl
- Parameter Estimation and Bayesian Analysis Β· DifferentialEquations.jl
- Physics-Informed Neural Networks solver Β· NeuralPDE.jl
- SciML: Open Source Software for Scientific Machine Learning* random_fields.pdf
- SciML/DiffEqFlux.jl: Universal neural differential equations with O(1) backprop, GPUs, and stiff+non-stiff DE solvers, demonstrating scientific machine learning (SciML) and physics-informed machine learning methods
- SciML/NeuralPDE.jl: Physics-Informed Neural Networks (PINN) and Deep BSDE Solvers of Differential Equations for Scientific Machine Learning (SciML) accelerated simulation
- SciML/SciMLTutorials.jl: Tutorials for doing scientific machine learning (SciML) and high-performance differential equation solving with open source software.
- Score-Based Generative Modeling through Stochastic Differential Equations
- Seminars & Workshops | DATA DRIVEN SCIENCE & ENGINEERING
- Solving Systems of Stochastic PDEs and using GPUs in Julia
- Structured Random Matrices
- Verdinelli, Wasserman : Hybrid Wasserstein distance and fast distribution clustering
- willtebbutt/TemporalGPs.jl: Fast inference for Gaussian processes in problems involving time

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